Hi,
I just tried to trim my dataset, but I keep getting an error. I got an error when I ran fastqc on it too, but the process went forward to completion so I just went with it. It says “alert Galaxy Team,” so I am.
The server could not complete the request. Please contact the Galaxy Team if this error persists. Error executing tool: cannot find ‘forward’ while searching for ‘readtype.fastq_pair.forward.name’
{
“history_id”: “756435eb87d27ce9”,
“tool_id”: “toolshed.g2.bx.psu.edu/repos/pjbriggs/trimmomatic/trimmomatic/0.38.0”,
“tool_version”: “0.38.0”,
“inputs”: {
“readtype|single_or_paired”: “collection”,
“readtype|fastq_pair”: {
“values”: [
{
“id”: “b19005227511d567”,
“src”: “hdca”,
“hid”: 651,
“name”: “HAV”,
“keep”: true,
“tags”: []
}
],
“batch”: false
},
“illuminaclip|do_illuminaclip”: “true”,
“illuminaclip|adapter_type|standard_or_custom”: “standard”,
“illuminaclip|adapter_type|adapter_fasta”: “TruSeq2-SE.fa”,
“illuminaclip|seed_mismatches”: 2,
“illuminaclip|palindrome_clip_threshold”: 30,
“illuminaclip|simple_clip_threshold”: 10,
“illuminaclip|min_adapter_len”: 8,
“illuminaclip|keep_both_reads”: “true”,
“operations_0|operation|name”: “SLIDINGWINDOW”,
“operations_0|operation|window_size”: 4,
“operations_0|operation|required_quality”: 20,
“output_logs”: “false”,
“output_err”: “false”
}
}