I am looking for a workflow to find new transcripts in scRNA-Seq datasets. Do you know what galaxy tools could be used for this analysis?
I had a experience to analyze transcripts in bulk RNA-Seq data using HISAT2 - StringTie pipeline.
I am wondering if these tools can be used for scRNA data, or if I can use another tool inside the Galaxy for this task. If StringTie can be used for scRNA, I would appreciate if if you could tell me how to use it.
It would be great if someone knew how to proceed with this analysis.