Finding new transcripts in single-cell RNA-Seq datasets

[jennaj]

Hi @miaeyaho

Please see this prior Q&A. There is a Galaxy GTN tutorial/workflow that covers this analysis.

scRNAseq Galaxy workflow

Hello Galaxy folks, I have been using galaxy for a while to analyse RNAseq and I think it’s incredible. Now I was wondering if there would be any workflow to work with single cell RNAseq data from FASTQ files. I have been trying to follow-up these tutorials But so far I couldn’t finish it so I was wondering if any of you know about a complete workflow. I liked this one from the EMBL-EBI https://www.youtube.com/watch?v=1w4sA-qyO3g but they use data from GXA as the source, so the preproce…

Thanks!