FRiP score chip-seq

1

Hi!
i would like to calculate FRiP score for my CHiPseq analysis, does everyone has an idea on how to do it ?
thanks a lot!

2

Hi @Marine_Bergot,

it can be computed by using the following tools:

  1. bedtools SortBed: tool
  2. bedtools intersect intervals: tool
  3. samtools view: tool
  4. awk: tool

You can find the details about the parameters in the following post.

It requires to include a new parameter in one of the tools; I opened a Pull Request in order to modify it.

Regards

3

Hi @Marine_Bergot,
now the FRiP score can be computed.

Regards