Hello, is it possible to upload FASTQ (without downloading it in my PC) in Galaxy from NCBI GEO that does not have a SRR accesion name? I can only find it in Bioproject. Thanks.
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go to Get DATA and then EBI SRA ENA… . and after that you can put your bioproject number in the search box.
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and from there? I cannot find my data there. Just the study and some more random info.
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search for some bio project number or srp number or study number…if you can not find it in paper, search your paper in GEO DATASETS
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There is no SRP number, I searched in GEO DATASETS. Found it. But I don’t know how to send it in GALAXY just with the bio project and GEO number ( without downloading in my PC). Am I missing something?
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I also tried the FTP upload. However I can’t sign in. It doesn’t even mention any error.
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OK, so I arrived at the conclusion that the raw data for this particular study is not available. Actually it says right here
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yes. if you find it in geodata set. you should paste the project or sra number to address i told you last comment. then you will see your data. after that you should send it to galaxy just by clicking on your data on galaxy column.
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try the GSE code .see if its working
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