Hello. I have large amounts the data that I have to work to and not enough storage on my PC. Also it would be more time-efficient. I want to avoid pressing 96 times on the Galaxy button in ENA SRA so I can have all my samples. Is there any way at the moment to retrieve multiple samples at a time directly into Galaxy?
If the samples are available on URLs you can have Galaxy download them for you.
Sorry, I don’t quite understand what you mean. Can you be more specific?
On the screenshot below, when I hit start, Galaxy will download the files without them ever being on my computer.
Cool. I am going to try it. So far, I tried to upload the SRA accesion list of all the samples in Galaxy and from there to retrieve all the data at once. It’s processing. I hope it works.
Keep in mind the files have to be publicly accessible for this to work.