"From peaks to genes" error with UCSC Main

usegalaxy.eu support
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3

Hello again @apventeo

The problem seems to be with how the data is moving into Galaxy. We’ll need to figure out why.

The file content itself is fine. I was able to download the file directly (instead of checking the “send to Galaxy” box), then upload the file to Galaxy. You can get a copy from my history.

How to:

  1. Click on this shared history link to open it in a browser window https://usegalaxy.eu/u/jenj/h/test-galaxy-intro-peaks2genes
  2. Use the “Import” button found in the top left corner
  3. Go into the User → Histories menu in the top masthead, and navigate to the imported history
  4. Copy the dataset into your history. Copy a dataset between histories

Or, you can just work in the imported history. It is yours to work in, copy data out of, run more jobs in, then later even delete as you want :). Copies of histories are fully independent, so if anyone else runs into this problem before we can fix it, they can do the same when working with this tutorial, or can download/upload the particular file they need.

Update2: The issue has been reported to the UCSC team at their mailing list and is pending a correction. https://groups.google.com/a/soe.ucsc.edu/g/genome/c/-OLkG9MnwMk

Thanks again for reporting the problem!