jennaj
September 13, 2023, 9:03pm
2
Hi @Tcomplex
Yes, the link sent from UCSC changed unexpectedly for all queries , and we are working with them to fix the problem.
This Q&A from earlier today has all the details. In short, download the output from the Table Browser to your computer, then upload it to Galaxy to get around the problem. The files themselves are not impacted, just the “handshake” URL between the two services.
The problem seems to be with how the data is moving into Galaxy. We’ll need to figure out why.
The file content itself is fine. I was able to download the file directly (instead of checking the “send to Galaxy” box), then upload the file to Galaxy. You can get a copy from my history.
How to:
Click on this shared history link to open it in a browser window Galaxy | Europe
Use the “Import” button found in the top left corner
Go into the User → Histories menu in the top masthead, and navigate to the imported history
Copy the dataset into your history. Copy a dataset between histories
Or, you can just work in the imported history. It is yours to work in, copy data out of, run more jobs in, then later even delete as you want :). Copies of histories are fully independent, so if anyone else runs into this problem before we can fix it, they can do the same when working with this tutorial, or can download/upload the particular file they need.
Update2 : The issue has been reported to the UCSC team at their mailing list and is pending a correction. https://groups.google.com/a/soe.ucsc.edu/g/genome/c/-OLkG9MnwMk