Hello Community Members
The genome that I need to map my reads to is not listed in the reference genome list while using HISAT2. Can anyone share with me the procedure to index my required reference in HISAT2 genome list? Is it alright if I directly upload a fasta file for the reference genome from my PC to the history and use the same as a reference genome?
Following is the NCBI link for the reference genome of the microorganism that I am working with
Thank you for any help