Hi would it be possible to add this genome?
Also if I want to align using Hisat2 and use a file added to my local history in the meantime, can I just use a fasta file or do I need to generate the .ht2 files?
thanks
d’Artagnan,
It would be possible to add that genome to hisat2’s indexes, but in the meantime, you can get away with uploading the reference genome and using that as another input by selecting the Use a genome from history option. The tool will then generate its own .ht2 files for that analysis, so you wouldn’t need to do anything in addition.
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