I submitted 12 HISAT2 jobs a few hours ago. While two of them ran successfully within 10 minutes, the rest have not started running (they are all grey and “waiting to run”). No other jobs are running.
Should I keep waiting, or is there a problem on my end?
Allow the jobs to stay queued. The jobs will run when resources become available again. Public servers utilized common resources shared with everyone else working at the same place; some of your jobs will run, then other people’s, then more of yours, repeat.