Hi,
I am trying to import 3-5GB fastq.gz MG files into Galaxy, and the imported file sizes are smaller than the original ones. What should I do to fully import my files?
Thanks!
Hi,
I am trying to import 3-5GB fastq.gz MG files into Galaxy, and the imported file sizes are smaller than the original ones. What should I do to fully import my files?
Thanks!
Hi @earthworm
If you really think that the connection between your computer and the Galaxy server is dropping out, the process will usually end in an error – in the Upload tool itself or as a “red” dataset in the history. This would be especially true for a compressed file. So, maybe something else is going on.
You could run this command on your data locally and one in Galaxy to compare → Secure Hash / Message Digest. The md5 option is usually a good choice. If you are not sure how to run that on your computer – try an internet search, since the exact command can differ by operating system.
Other items:
Two other solutions when working at the UseGalaxy.eu server.
Give that a review, then maybe share more details if things are still going wrong. Screenshots would probably help to clarify more for this.
Thanks. Uploading the files on FTP server went well. However, the file size dropped again when I imported files to Galaxy from the FTP directory. Could there be any way to address this problem?