I uploaded a fasta sequence of a genome to my history.
I installed data manager bwa mem index builder.
I can see the tool under Admin–> manage tools however in the Analyze Data tab, when I search bwa I do not see my tool, did I not install it properly?
I notice that the Analyze Data tool is missing many of the tools from the usegalaxy.org, I would eventually like to install the tools I need so that I have access to them in the Analyze Data and Workflows.
I see I can still have access to the tool through Admin --> local data however it does not seem to recognize the fasta sequence in my history as the field “source fasta sequence” says no options available?