IQ-TREE bootstrap confidence/value trees

Hi, I am new in Galaxy. I want to ask related to get the .contree file and .treefile with bootstrapping value or confidence. I saw that in the .iqtree file but I want to generate it automatically from Galaxy. Thanks

Welcome, @Dhihram_Tenrisau

I’m not sure what you mean by automatically. Can you explain more? Maybe describe a bit about your starting data?

As a reference we have some tutorials that might help, or at least provide context.

Then there are tools not in tutorials – start in the Multiple Alignments tool group, or Evolution. Example: MSABOOT Output PHYLIP file with bootstrapped multiple sequence alignment data that can be used as input to a tool like Quicktree.

Maybe try to find a publication to follow that does what you want to do. You’ll probably find those tools or analogous open source tools in Galaxy. If you have a tool that does something and you can’t find that we have it yet, you can ask about it here.

Let’s start there, thanks! :slight_smile: