Hi! I met a problem when following the post-assembly-QC-workflow: Hands-on: ERGA post-assembly QC / ERGA post-assembly QC / Assembly Here is the error message when I runed the BlobToolKit within this workflow: Traceback (most recent call last): File “/opt/conda/envs/btk_env/bin/blobtools”, line …

Hi @chuan_zhai The Diamond hits that do not have a taxonomy assignment are empty in the 7th column … and that is failing the BlobToolKit tool. Try running this on your Diamond output to get rid of those lines → tool: Select lines that match an expression option: NOT Matching expression: .*\t$ …

Problem on following the post-assembly-QC-workflow

usegalaxy.eu support

jennaj July 15, 2024, 8:13pm 2

Hi @chuan_zhai

I’m reviewing the history, more feedback soon.

Xref: BlobToolKit problem

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Problem on following the post-assembly-QC-workflow

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