Hi!
I met another problem when running BlobToolKit. Here is my history: Galaxy.
Here is the warning message: Traceback (most recent call last):
File “/opt/conda/envs/btk_env/bin/blobtools”, line 8, in
sys.exit(cli())
File “/opt/conda/envs/btk_env/lib/python3.9/site-packages/blobtools/blobtools.py”, line 105, in cli
sys.exit(subcommand())
File “/opt/conda/envs/btk_env/lib/python3.9/site-packages/blobtools/lib/add.py”, line 203, in cli
main(args)
File “/opt/conda/envs/btk_env/lib/python3.9/site-packages/blobtools/lib/add.py”, line 149, in main
parsed = field[“module”].parse(
File “/opt/conda/envs/btk_env/lib/python3.9/site-packages/blobtools/lib/hits.py”, line 541, in parse
blast = parse_blast(
File “/opt/conda/envs/btk_env/lib/python3.9/site-packages/blobtools/lib/hits.py”, line 83, in parse_blast
taxid = row[cols[“staxids”]]
IndexError: list index out of range
I exactly followed this Galaxy tutorial workflow: Hands-on: ERGA post-assembly QC / ERGA post-assembly QC / Assembly
It seems that this problem came from the output of the diamond. Is it right? How can I fix it?
Cheers,
Chuan