I am new to galaxy and new to proteomics and analysis. I have raw data performed with TMT16PLEX. There are 4 groups within 58 samples mixed in TMT16plex. I cannot run MAXquant because there no such option with TMT16PLEX. Does anyone of you would like to help me on how to analyze those raw data mixed groups in TMT16PLEX? or maybe someone has a workflow or a file for MaxQuant TMT16plex?
Thanks in advance