RNAseq analysis

[jennaj]

@asta

Ballgown

This tool was wrapped by a community contributor and I’m not sure if it will work with Stringtie input (likely just Cufflinks).

As @Sammy notes, Tophat and all of the Cuff* tools are considered deprecated in Galaxy (the entire Tuxedo suite of tools). None of the wrappers have been updated for quite some time.

Current RNA-seq protocols can be found here:

@jennaj

Galaxy Training Network Tutorials : Some GTN tutorials are appropriate for Galaxy Main and some are not. Where you can run each is noted per tutorial – click on the Galaxy instances gear icon to review the Public Galaxy server choices. If a tutorial is supported by a pre-configured Galaxy Docker training image, instructions for how to get it will be listed below the tutorial listings, per category.