Hello, I am attempting to complete the trimmomatic step, I keep receiving the error below: Picked up _JAVA_OPTIONS: -XX:MaxPermSize=2G -Xmx6G -Xms1G -Djava.io.tmpdir=/data/2/galaxy_db/tmp -Duser.home=/data/2/galaxy_db/tmp OpenJDK 64-Bit Server VM warning: Ignoring option MaxPermSize; support was …

Hi @ahard I checked Trimmomatic in Europe with SE and PE data: no issues detected. Maybe consider doing a relevant tutorial, eg Quality Control Kind regards, Igor

Trimmomatic error: Warning Perm size

usegalaxy.eu support

jennaj July 3, 2023, 9:11pm 3

Merging in duplicated post: Help with Trimmomatic error

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Trimmomatic error: Warning Perm size

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