unable to install databases for ASaiM instance

usegalaxy.org support
1

Hello,
I have installed docker to use ASaiM. When trying to install databases after getting container ID, using the command
sudo docker exec 63cce0e716f4 ./run_data_managers
I keep getting the following error
Launch the data managers
Storing log file in: /tmp/ephemeris_dysu8w00
Running data managers that populate the following source data tables: [‘all_fasta’]
Running data managers that index sequences.
Traceback (most recent call last):
File “/tool_deps/_conda/bin/run-data-managers”, line 10, in
sys.exit(main())
File “/tool_deps/_conda/lib/python3.7/site-packages/ephemeris/run_data_managers.py”, line 314, in main
data_managers.run(log, args.ignore_errors, args.overwrite)
File “/tool_deps/_conda/lib/python3.7/site-packages/ephemeris/run_data_managers.py”, line 274, in run
run_jobs(self.index_jobs, self.skipped_index_jobs)
File “/tool_deps/_conda/lib/python3.7/site-packages/ephemeris/run_data_managers.py”, line 256, in run_jobs
tool_inputs=job[“inputs”])
File “/tool_deps/_conda/lib/python3.7/site-packages/bioblend/galaxy/tools/init.py”, line 175, in run_tool
return self._post(payload)
File “/tool_deps/_conda/lib/python3.7/site-packages/bioblend/galaxy/client.py”, line 173, in _post
files_attached=files_attached)
File “/tool_deps/_conda/lib/python3.7/site-packages/bioblend/galaxyclient.py”, line 104, in make_post_request
params = self.default_params
File “/tool_deps/_conda/lib/python3.7/site-packages/bioblend/galaxyclient.py”, line 239, in default_params
return {‘key’: self.key}
File “/tool_deps/_conda/lib/python3.7/site-packages/bioblend/galaxyclient.py”, line 229, in key
raise Exception(“Failed to authenticate user.”)
Exception: Failed to authenticate user.
Restart Galaxy

Please help. Thanks

2

same problem. Is there someone that solved it? thanks

3

Hi @c.vecchi

That was the important part of the error message for the other person.

Instructions for incorporating the run-data-mangers command is here: GitHub - bgruening/docker-galaxy-stable: 🐳📊📚 Docker Images tracking the stable Galaxy releases.

Maybe compare to what you are doing now?

Please share more details about your instance and logs if you need more help. You can post here, and copy the link for the topic and ask at the Galaxy Docker chat, too.

Ref