Which tools shall I use to find out up and down regulation genes in RNA seq? Solution: GTN Transcriptomics & Differential expression tutorials

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Hello, hope everyone well .
I have a project where I am given 57 sequences ( including control).
I would not know what data there is there , it is related to the pituitary adenoma ( different forms ) and it is also including controls . What I need - UP & DOWN regulated genes. Can you recommend work flow or tutorial exists?
Thank you in advance .

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Hi @Lidia_Ryabova, there is a range of tutorials here: https://training.galaxyproject.org/training-material/topics/transcriptomics/. Most of them have workflows attached which you can use.

I am not really that familiar with RNA-seq, but maybe this one is a good start? https://training.galaxyproject.org/training-material/topics/transcriptomics/tutorials/de-novo/tutorial.html

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