Missing tool: Annotate DESeq2/DEXSeq output tables

[gerrit_thomsen]

Hi, I am an absolute beginner regarding Galaxy and trying my first RNA-Seq workflow. I cannot find the following tool: Annotate DESeq2/DEXSeq output tables.
I am on https://usegalaxy.org/ and want to annotate gene names and location to a filtered output list of DESeq2.

Thanks in advance
Gerrit

[jennaj]

Welcome @gerrit_thomsen

This tool is not available at Galaxy Main https://usegalaxy.org (yet).

For now, try using Galaxy EU https://usegalaxy.eu instead.

The larger plan is to synch up more tools between all of the usegalaxy.* servers, but that is still a work in progress. I made a separate request to get this tool added sooner (ticket). The updates and tool additions will not be immediate, so do not wait for it to complete. Do at least this part of the analysis at the EU server for now.

It sounds like you are following a Transcriptomics GTN tutorial. Not all are supported at each public Galaxy server. How to find out which servers support any particular tutorial is explained here:

@jennaj

Galaxy Training Network Tutorials: Some GTN tutorials are appropriate for Galaxy Main and some are not. Where you can run each is noted per tutorial – click on the Galaxy instances gear icon to review the Public Galaxy server choices. If a tutorial is supported by a pre-configured Galaxy Docker training image, instructions for how to get it will be listed below the tutorial listings, per category.

Thanks!