DESEq2 not displaying final table

1

Hi, I am new to Galaxy and more generally new to RNA seq analysis. I have been trying to use the intro to RNA seq tutorial from the link below. Everything flow properly, but at the end I cannot see any table output from DESeq2. could anyone help?

https://galaxyproject.org/tutorials/rb_rnaseq/#performing-differential-expression-analysis

Thanks
Alex

2

Hi Alex,

please have a look here: https://training.galaxyproject.org/training-material/topics/transcriptomics/
Especially this one here: https://training.galaxyproject.org/training-material/topics/transcriptomics/tutorials/ref-based/tutorial.html

Hope that helps,
Bjoern

@jennaj should we take down the link from Alex and redirect to the GTN?

3

Dear Bjoern,

Thanks for the quick reply. I will delve into the links you suggested.
Shall I do something with regard to galaxy GTN? This seems more appropriate for my level of knowledge.

Best

Alessandro