Converting CSV files to Fasta for Trinity tool

Hi there,

I have CSV data with FASTA sequences that I would like to analyse with the Trinity tool. Is there a way to convert the CSV file to FASTA or would I have to do this externally? I know that I can change the datatype when the data is uploaded but I want to make sure it can detect the FASTA sequences to analyse.

Thanks!
Katie

Hi,

Could you share the first few lines of your file? I am interested to see the format of your csv file. Is it a two column file with IDs in the first column and sequences in the second column?

Best,
Armin

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