Is it possible to download 'Trinity.fasta.gene_trans_map' from Galaxy Trinity?



Dear all,

After I executed Trinity, I obtained 2 files as assembly transcripts.fasta and log.txt files.
I would like to know that is it possible to download ‘Trinity.fasta.gene_trans_map’ from Galaxy Trinity. It is important for my downstream analysis.

Thank you so much,


Hi, This report is not currently output from Trinity as wrapped for Galaxy at, but you can parse out the information from the fasta results.

Try this workflow:

There are many ways to manipulate data. The tools I included in the workflow are simplified, and just one example of how to do this.


Trinity wiki that describes the fasta title line formatting:

Sample of a ‘Trinity.fasta.gene_trans_map’ file: