Hello. I am trying to identified the regions that are differently enriched (H3K4me3) between 2 groups using Diffbind, but keep getting following error. I’d appreciate any help!
Error in wilcox.test.default(toplot[[i]], toplot[[j]], paired = FALSE) :
not enough ‘y’ observations
Calls: dba.plotBox … pv.plotBoxplot → pvalMethod → wilcox.test.default
1: Unable to perform PCA. Make sure there aren’t fewer sites than there are samples.
2: In bxp(list(stats = c(4.28039961112653, 4.28039961112653, 5.75150066843621, :
some notches went outside hinges (‘box’): maybe set notch=FALSE