Hi @jlbowman
These make me guess that the output was empty, so the tool didn’t have any content to move. That use-case could probably be trapped better (and we could ticket it) but I’d like to confirm.
Now, why there were no annotations could be due to a data format problem rather than actually no annotations. Cleaning up the fasta format might be enough, and the tool NormalizeFasta could be used.
You could also remove any shorter assembly results (anything that might just be a single original read). Annotation tools can be overwhelmed by being asked to process raw assembly results that haven’t been quality filtered. You could even just run a few contigs through the tool as a test. Try that now to see what happens.
If you want to share a link to your history I’ll take a closer look at the input details (exact data, params, etc). Run your “few contigs” test first in the same history as the full sized data please.