I’m trying to use the Train Augustus tool, but it gives this error: Error: training set file /data/jwd04/main/058/664/58664282/working/genome.gff3 has neither Genbank nor GFF nor FASTA format!
Even though the file is in .gff3
Welcome, @schoemberger
If the annotation supplied is not understood by the tool, then one of these is going on:
- Identifier mismatch between the fasta input and the annotation input.
- The annotation is missing attributes that the tool expects to find.
- Potentially some format issue in one or both of those inputs.
Theses tutorials have some examples, and the tool form help and linkouts to the author documents/publications have more.
If you need more help, please consider posting back a few lines of both inputs that you expected to be a match based on the sequence identifier.
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