error message when doing de novo assembly


I was trying de novo assembly for a fish species, but I keep getting the same error message no matter what programs I used, ABySS, SPAdes, VelvetOptimiser. Here is what the error message looks like:

2020/11/03 15:03:16.35 parrot_run[70105] child:70213 notice: warning: system call 237 (mbind) not supported for program /cvmfs/

The input data set should be fine since I can do trimming, mapping stuff. So I’m completely confused. What should I do?

Yunyang Wang

1 Like

GTN Tutorials for assembly (including Unicycler):