I am very new to Galaxy. I managed to create a countdata ,factordata, annotate form the in house bulk-RNA dataset. now I am trying to do Specify Contrast(s) of interest (based on the 2: RNA-seq counts to genes) but I keep getting errors. is anyone know how to fix this issue?
An error occurred while running the tool toolshed.g2.bx.psu.edu/repos/iuc/limma_voom/limma_voom/3.50.0+galaxy0 .
Execution resulted in the following messages:
Fatal error: Exit code 1 ()
Tool generated the following standard error:
Error in scan(file = file, what = what, sep = sep, quote = quote, dec = dec, : line 7944 did not have 5 elements Calls: read.table → scan Execution halted
There are a number of helpful resources to self diagnose and correct problems.
Start here: My job ended with an error. What can I do?