Format Data for LEfSe

[nicollyav]

I’m trying to run analyses with the LEfSe and I’m getting errors. Can anyone help me?
These seem to be internal script errors.

error
An error occurred with this dataset:
Traceback (most recent call last):
File “/galaxy_venv/bin/lefse_format_input.py”, line 33, in
sys.exit(load_entry_point(‘lefse==1.1.2’, ‘console_scripts’, ‘lefse_format_input.py’)())
File “/galaxy_venv/bin/lefse_format_input.py”, line 25

[jennaj]

Welcome, @nicollyav

The server where you are working hosts custom tools, so you should reach out to the scientists that know these best for troubleshooting help.

More details about where to find that forum are here.

@jennaj

Alternative support forums

When working at certain Galaxy sites, questions are best asked at the places the scientists who run the server host discussions. They can also let you know if there happen to be any current technical problems that may be impacting your analysis. These are the ones we know about…

Galaxy.bioBakery.org → https://forum.biobakery.org
This server was previously hosted at Galaxy, and prior Q&A here is tagged galaxy-huttenhower

Hope you are able to find a solution there!