How do i assemble scaffold in the one long sequence


In my lab we have ordered a full genome sequence in the commercial firm. We received from them a few fasta files(scaffolds) that multiple sequences them. How can i map these scaffolds onto the reference genome? I tired RagTag, but it seems like i doing smt wrong as output file is empty.

If anyone can help, please do :slight_smile:

Hi @sankkan

could you share your history with me? Perhaps there is a problem with the Ragtag tool, since it was included a few days ago, and we havenโ€™t tested it so much. I shared my email address with you in a private message.