How to locate a reference annotation GFT file: example sacCer3 + others

[Rafael_Lema]

Hi, I am using ChIPseeker for yeast experiment, however I didn´t find the gtf file of yeast (sacCer3). Where can I find it?

Thank you.

[jennaj]

Welcome @Rafael_Lema

iGenomes hosts a quality GTF file for UCSC’s sacCer3 genome.

How to get it out of the archive and uploaded to Galaxy is covered in this prior post:

@jennaj

For iGenomes, the archive corresponding to the target genome/build needs to be locally downloaded, the tar archive unpacked, and then just the genes.gtf data uploaded to Galaxy (browse the local file, or use FTP). Find all available genome/builds here: iGenomes

Thanks!

[Rafael_Lema]

Thanks for your answer.