I have hic file showing the each scaffold in mcool formate. I want to ask how can I make the hic plot using hicexplorer tool “hicPlotmatrix”. I tried with this tool but always error in this. Please guide me how to get this plot
The data formats that the tool works with are listed next to each input area.
Example →
And, these are tutorials about how to get data in that format → Tutorials using bgruening/hicexplorer_hicplotmatrix
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As a guess, maybe there is a reference data mixup? Meaning, how the data scaffolds are labeled in the file versus specified on the form might not be matching up. Remember that these will all be “different” to a tool → scaffold1 versus Scaffold_1 versus scaffold_1