I am analyzing 1 RNAseq data which has been deposited in GEO as the RSEM upper quantile normalized data. I used limma-voom for DEGs between groups using galaxy. The error which I have got was:
 “Extracting counts”
Error in cpm.default(data$counts) :
library sizes should be finite and non-negative
Calls: cpm -> cpm.default
Can anyone suggest me how to handle this data?
Thanks in advance