I am working in Galaxy with miRNAs data.
I am trying to pass my reads mapped with Bowtie to counts with the featureCounts app.
I have not been successful, the process gives me an error because the miRBase annotation file is in gff3 format and featureCounts asks for this file in GTF file.
How can I solve this step?
P.S. I have used the miRBase sequences to map my reads.