Persistent problems with RMSD analysis relate to the Guide "High Throughput Molecular Dynamics and Analysis"

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Dear Jennai,

Thank you very much for your time and the clear explanations you provided. I also noticed that you’re one of the authors of the Guide—it’s great to be working with someone so knowledgeable!

I’ve attempted the analysis again, following the Guide’s instructions exactly, but unfortunately, I encountered the same error. I’ve double-checked the parameters, and they all appear to be set correctly.

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I prefer to handle things independently, as I believe in learning by doing. I like to “learn to fish rather than being given a fish,” so to speak, and my goal is to eventually create personalized workflows as I continue to develop my skills. However, I need a bit of guidance to get there. Could you help me understand how to proceed?

Thank you again for your assistance.

Best regards,
Henrrik

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Hi @henrrik_prendushi

I ran through the workflow associated with the tutorial last week, and it worked fine. I can let you know that this works best at the UseGalaxy.eu server for now. This was our conversation about it Problems with RMSD analysis relate to the Guide "High Throughput Molecular Dynamics and Analysis"

Were you also able to get the workflows to run? When I looked at your history before I wasn’t able to tell what exactly went wrong, but it also looked like you were not running the workflow yet, which is why I suggest that. Do you think more is going on? How can I help with it more?