Phylogenetics tutorial running on galaxy-local

[monikasharma]

I have installed Galaxy Local on my iMac and have been exploring the Phylogenetics Training Tutorial. When I completed the tutorial on the usegalaxy.org server, it took me around 15-20 minutes at most.

However, when I installed all the required tools on my locally installed Galaxy instance and repeated the tutorial, the process took significantly longer, especially for generating a Neighbor-Joining tree with FastTree where it is taking hours to complete and still shows in progress. [Image attached]

Am I missing something in the setup or configuration? This is my first time using Galaxy Local, so I’m wondering if there’s an optimization step I’ve overlooked.

[jennaj]

Hi @monikasharma

We have administrative tutorials here to get you started. Maybe review then let us know if you have any questions?

@jennaj

Local Galaxy

A local Galaxy server is a choice for personal use, and can be scaled to support multiple users.

Your service can be hosted publicly or privately. Connect to local, institutional, or commercial cloud computing resources and customize your usage policies.

Local Galaxy

• Training Network Galaxy server administration training
• Technical Documentation Galaxy releases, plus Admin and Development docs
• Open-source code base GalaxyProject Github repositories

Docker Galaxy

Much comes pre-configured, and common administrative tasks are simpler to implement and maintain. Be sure to review the repository’s README for these custom instructions.

Docker Galaxy

• Galaxy Docker - Galaxy Community Hub

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For job performance overall, these are the places you could start the review.

• https://docs.galaxyproject.org/en/master/admin/scaling.html
• Galaxy Job Configuration — Galaxy Project 24.1.0.dev0 documentation

Hope this helps!