Configuring download and extract Reads from NCBI SRA on local Galaxy

[lfdeoliveira]

Hi there. I’m having the same problem. Did you fix this? I really need to use this tool to facilitate and teach some students to analyze an RNA seq.

[jennaj]

Welcome, @lfdeoliveira

Let’s ask the tool developers for help at their chat. They may reply here or there, and feel free to join. You're invited to talk on Matrix

Meanwhile, if you could share more about your configuration, that might matter and speed this up. Do other tools work? What release are you running? What configuration have you done already?

And, some resources:

@jennaj

Local Galaxy

A local Galaxy server is a choice for personal use, and can be scaled to support multiple users.

Your service can be hosted publicly or privately. Connect to local, institutional, or commercial cloud computing resources and customize your usage policies.

Local Galaxy

• Training Network Galaxy server administration training
• Technical Documentation Galaxy releases, plus Admin and Development docs
• Open-source code base GalaxyProject Github repositories

Docker Galaxy

Much comes pre-configured, and common administrative tasks are simpler to implement and maintain. Be sure to review the repository’s README for these custom instructions.

Docker Galaxy

• Galaxy Docker - Galaxy Community Hub

[lfdeoliveira]

@jennaj

if you could share more about your

Hi @jennaj Thanks for your return. I’m using a local Galaxy version 21.01. The tool Faster Download and Extract Reads in FASTQ format from NCBI SRA (Galaxy Version 2.11.0+galaxy1)