im working with pair dataset collections, for example in trimmomatic every time im execute it to run, instead of giving me 2 types of data(paired and unpaired) it give multiple of them, its not just trimmomatic, every time i used collections it happens. is it normal or it is a problem ?
Trimmomatic will output four fastq datasets for each paired-end set of inputs: Paired R1, Paired R2, Unpaired R1, and Unpaired R2.
If that is not your result, a few questions to start troubleshooting:
- Were the job executed with a workflow?
- Are you getting exact dataset duplicates?
- These jobs were run at Galaxy Main https://usegalaxy.org?