I already have eggnog mapper data on orthologs. How can i separate this ortholog groups and visualize ortholog data as readable data
You can visualize the data in a tool like IGV.
This tutorial has an example.
If this doesn’t help, could you explain more about what you would like to do? Maybe with an example? Thanks! 
ps: I’m not sure if this question is also from you (since it is from a different account) but maybe both of you are working within the same class or laboratory? I’m going to link them together since the questions are very similar. protein domain and motif identification