I trying to do a QC for my files. And I keep encountering this error. This data set had previously pass the FastQC without any error before. However, when re-upload the file to do some re-analysis, now it keeps failing to pass QC. Anyone encounters the same problem and know how to solve it?
“Picked up _JAVA_OPTIONS: -Djava.io.tmpdir=/corral4/main/jobs/040/717/40717303/_job_tmp -Xmx7g -Xms256m
Failed to process file AG10_Phi_DeltaLL_S8_L001_R1_001_fastq_gz.gz
uk.ac.babraham.FastQC.Sequence.SequenceFormatException: Ran out of data in the middle of a fastq entry. Your file is probably truncated
cp: can’t stat ‘/corral4/main/jobs/040/717/40717303/working/dataset_53bb4f0c-c6c8-45b3-a706-13605487098b_files/*/fastqc_data.txt’: No such file or directory”