Hello, Trying to use DESEQ2 for a couple of days now, I have the output of FeatureCounts, I also used Limma Voom successfully. However I need the tables with the p-value and the fold difference in expression so I try to get them via DESEQ2. I tried to compare the Control with each mutant (4) but I …

Hey Samma, To give a short explanation. The wrapper DESeq2 in Galaxy that you use activates a script in R with DESeq2. Thus, the wrapper (Rscript) actually do mind that you provide the input data as a data.frame, but you do not really see it unless there is an error. That as a preface, yes limma v…

DESEQ2 - How does it work?

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jennaj October 26, 2023, 4:17pm 8

Hi @brebelo I will post in your new question, and close this older question out. Deseq2 analysis output too many DEGs

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DESEQ2 - How does it work?

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