Hi,
I am trying to use Funannotate predict annotation but I get an error
[Errno 2] No such file or directory: ‘/data/jwd02f/main/068/177/68177396/working/output/predict_misc/protein_alignments.gff3’
Thanks for any help!
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Welcome, @sabina-llr
Would you please share details about that job so we can check what is going on? This is the information we will need for troubleshooting → How to get faster help with your question
If you are following a tutorial, please also share the link to that.
Let’s start there 
References