IQ-TREE configuration

Hi @jaredbernard This is interesting, and I wonder if it is related to the larger query (probably not). It sounds like the choice is not supported (could be just at that server).

If you want to make the option change suggestion to the tool wrapper authors, a prior post explains how so I won’t repeat that (see below). The more details, or scientific help to guide the change, you can offer, the more likely it is to be picked up soon-ish. I don’t know if the choice is available in the original tool or not, but maybe you do, and sometimes it is possible layer in that type of advanced configuration into the wrapper anyway. Apologies that I misunderstood about this part originally!

And, the rest sounds good! Smaller data seems like the way to go for now. Four weeks is a bit nuts!