I want to upload the genome of camellia sinensis in fasta file into galaxy from NCBI datasets, please help me as I am a beginner. Ref-seq id is- GCF_004153795.1 Here is the NCBI link- https://www.ncbi.nlm.nih.gov/datasets/genomes/?acc=GCA_013676235.1&term=&utm_source=assembly&utm_medium=referral&utm_campaign=KnownItemSensor:org I also unable to upload the genome of it using weblink into ftp fies in galaxy, I have pasted the following link there but it’s cannot fetch it. https://www.ncbi.nlm.nih.gov/datasets/genomes/?acc=GCA_013676235.1&term=&utm_source=assembly&utm_medium=referral&utm_campaign=KnownItemSensor:org
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Hi @Abhisek_Dey, I think for now you need to get the genome directly from the refseq ftp site.
It appears the resources for GCF_004153795.1 are at Index of /genomes/refseq/plant/Camellia_sinensis/latest_assembly_versions/GCF_004153795.1_AHAU_CSS_1, and I believe the genomic fasta file is https://ftp.ncbi.nlm.nih.gov/genomes/refseq/plant/Camellia_sinensis/latest_assembly_versions/GCF_004153795.1_AHAU_CSS_1/GCF_004153795.1_AHAU_CSS_1_genomic.fna.gz
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Yes sir, Now I got it. Thank you.