Questions about uploading PDB file to 'Prepare receptor'

usegalaxy.org support
,
1

Hi, I’m trying to convert pdb file into pdbqt file for VINA docking.

But even if I upload my pdb file to ‘Prepare receptor’, the program recognizes
the file as pqr format. Is there a way to solve this?

I generated pdb file from SWISS-MODEL Interactive Workspace
because it wasn’t in the database.

2

Welcome, @jjh1998

In general, the Galaxy metadata detection is looking for a specific format and minimum content for the datatype assignments. If the guess is wrong, that is a clue that your custom content needs to be adjusted.

XRef →

  • Prepare receptor Tool to prepare receptor for docking with Autodock Vina (link to tool at ORG or EU)
  • See the format description for the PDB on the form

Would you like to share your example? Please see How to get faster help with your question