Hi. I’m running rnaSPAdes with the default parameters but searching in the manual, rnaSPAdes supports assemblying with strand-specific RNA-Seq dataset, which is different to FR and RF orientation of paired reads.
How can I include the flag --ss when setting the running parameters?
Thanks for your help!
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Hi, the Galaxy wrapper for rnaSPAdes will be updated soon and the --ss flag will be included. Regards, Stephan
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