I am very new to galaxy and with no knowledge in Bioinformatics. I’m trying to analyze some scRNA seq data from Cryptococcus neoformans.
I’ve been trying (unsuccessfully) to use the GTF2GeneList tool to generate the filtered FASTA and transcript gene-map using a GTF file and FASTA file downloaded from the NCBI (https://www.ncbi.nlm.nih.gov/assembly/GCF_000149245.1/), for later running Alevin
Every time I run the tool the same error appears: Fatal error: Exit code 1 ().
I’d appreciate if you could tell me what’s that meaning and if you have any suggestions.
Thanks a lot for the help.