I am trying to upload my dataset for LefSe and I keep getting the following error. I have tried troubleshooting many times but still it is not moving forward. Can anyone provide any suggestions?
Traceback (most recent call last):
File “/galaxy_venv/bin/lefse_format_input.py”, line 33, in
sys.exit(load_entry_point(‘lefse==1.1.2’, ‘console_scripts’, ‘lefse_format_input.py’)())
File “/galaxy_venv/lib/python3.7/site-packages/lefse-1.1.2-py3.7.egg/lefse/lefse_format_input.py”, line 449, in format_input
File “/galaxy_venv/lib/python3.7/site-packages/lefse-1.1.2-py3.7.egg/lefse/lefse_format_input.py”, line 192, in numerical_values
File “/galaxy_venv/lib/python3.7/site-packages/lefse-1.1.2-py3.7.egg/lefse/lefse_format_input.py”, line 192, in
ValueError: could not convert string to float: ‘Sample9’
I am working on the Galaxy Module for the LefSe Analysis. After uploading my files on this server, I keep getting the above mentioned error. I have tried checking the formatting of the file via Notepad ++, tried my level best in double checking the format, still I am not getting through the process.
If you are working at this server below, there is another forum that is a better place to learn about both of your possible situations: problems with the server itself or problems with how your specific work is being done.
Does this look right? Or are you working somewhere else? Where?
