Galaxy Community Help

Topic	Replies	Views	Activity
What should I do if my data exceeds the given 250GB of storage? account , storage-dashboard , resources , manage-quota , scratch-space I’m working on a transciptomics data which will probably exceed the given 250GB data. Is there any possible solution to this? for example increasing my storage?	3	1178	August 15, 2024
Troubleshooting resources for errors or unexpected results share-or-publish , troubleshooting , queued-gray-datasets , resources How to troubleshoot your work in Galaxy, and how to ask for help! :mag_right: Review your Job Details → inputs + parameters + logs using the i-icon inside of any dataset. :mortar_board: Learn with a tutorial and custom…	5	10727	April 17, 2024
BWA MEM2 too slow server-admin , workflow , galaxy-local , tool-help , variant-analysis	9	24	April 2, 2025
Cannot "export history to file" usegalaxy.org support history-transfer , troubleshooting , server-open-issue	11	15	April 1, 2025
Loading sqlite database file onto RStudio usegalaxy.org support troubleshooting	1	2	April 1, 2025
Galaxy Kraken2 Perform Quality Filtering? tool-help , kraken2	1	1	April 1, 2025
FreeBayes not working with built-in genome workflow , galaxy-local , tool-help , variant-analysis	1	2	April 1, 2025
Archived history usegalaxy.eu support igv , history-archive , resources	3	9	April 1, 2025
What do these FastQC results mean? quality-control , fastqc	4	11	April 1, 2025
How to solve the error "there is no R package" when I tried to install my own R script on the docker galaxy container. tool-dev , planemo	2	7	March 31, 2025
How to delete very old purged histories? usegalaxy.org support storage-dashboard	4	11	March 31, 2025
Unsharing shared histories usegalaxy.org support share-or-publish , server-open-issue	4	14	March 31, 2025
How to map a collection of individual samples against a custom reference genome with RNA STAR usegalaxy.eu support troubleshooting , igv	3	10	March 31, 2025
QUAST ERROR. Can someone offer guidence? usegalaxy.org support troubleshooting , genome-annotation	12	39	March 31, 2025
NCBI BLAST+ blastn: what does "Maximum hits to consider/show" do? usegalaxy.eu support ncbi_blastn_wrapper	1	12	March 31, 2025
Downloading data to own storage server usegalaxy.org support history-transfer , user-preferences , storage-dashboard	3	18	March 31, 2025
Trouble connecting with FTP usegalaxy.eu support upload	1	10	March 31, 2025
At uploading got "Error Content Not Available" usegalaxy.org support upload	2	9	March 31, 2025
Is Phageterm Still on Galaxy? troubleshooting	5	102	March 29, 2025
Variant calling using snippy usegalaxy.org support variant-analysis , snippy	1	7	March 29, 2025
Deleted job still running usegalaxy.eu support server-admin	1	6	March 29, 2025
BBTools: BBNorm usegalaxy.eu support troubleshooting	2	10	March 28, 2025
Fastp - Collection usegalaxy.eu support collections , fastp	1	10	March 28, 2025
Error with FeatureCounts usegalaxy.org support transcriptomics	1	7	March 28, 2025
HISAT2 and RNA STAR reference genomes usegalaxy.org support custom-genome , transcriptomics , reference-genome , custom-build	1	5	March 28, 2025
Splitting BAM Mapped and Unmapped usegalaxy.org support bamfilter	4	18	March 28, 2025
Failure to upload fastq files to my history usegalaxy.org support upload	1	5	March 28, 2025
"Job in error state.." Planemo Test Error Message server-admin , tool-dev	7	45	March 27, 2025
Is there a way to merge collections with different structures? Or merge collections inside a list? usegalaxy.eu support collections , merge-collections	13	51	March 26, 2025
Error When Upgrading Database server-admin	4	20	March 24, 2025

What should I do if my data exceeds the given 250GB of storage?

I’m working on a transciptomics data which will probably exceed the given 250GB data. Is there any possible solution to this? for example increasing my storage?

3

1178

August 15, 2024

Troubleshooting resources for errors or unexpected results

share-or-publish , troubleshooting , queued-gray-datasets , resources

How to troubleshoot your work in Galaxy, and how to ask for help! :mag_right: Review your Job Details → inputs + parameters + logs using the i-icon inside of any dataset. :mortar_board: Learn with a tutorial and custom…

5

10727

April 17, 2024

BWA MEM2 too slow

server-admin , workflow , galaxy-local , tool-help , variant-analysis