Galaxy Community Help

Topic	Replies	Views	Activity
What should I do if my data exceeds the given 250GB of storage? account , resources , manage-quota , scratch-space I’m working on a transciptomics data which will probably exceed the given 250GB data. Is there any possible solution to this? for example increasing my storage?	3	436	August 15, 2024
Troubleshooting resources for errors or unexpected results share-or-publish , troubleshooting , queued-gray-datasets , resources How to troubleshoot your work in Galaxy, and how to ask for help! :mag_right: Review your Job Details → inputs + parameters + logs using the i-icon inside of any dataset. :mortar_board: Learn with a tutorial and custom…	5	10371	April 17, 2024
Make.contigs (Mothur error) tool-help , mothur , mothur_make_contigs	8	23	November 6, 2024
Getting full paths of fastq files for QIIME2 Manifest files in Galaxy usegalaxy.eu support qiime2	1	3	November 6, 2024
Reference annotation for TAIR10 reference-index , reference-annotation , reference-genome , reference-transcriptome	1	3	November 6, 2024
Trim and split Nanopore data set to input in Krona Pie Crat usegalaxy.org support	0	1	November 6, 2024
Adding C. elegans WS235 ce11 reference genome to be used in RNA STAR usegalaxy.org support reference-genome	1	4	November 6, 2024
16s Metagenomics freelance training	0	2	November 6, 2024
What to enter as adapter sequence of Cutadapt tool? cutadapt	0	2	November 6, 2024
Faster download FASTQ from NCBI SRA_ERROR usegalaxy.org support upload , troubleshooting , transcriptomics	3	7	November 6, 2024
Very few genes in htseqCount-/FeatureCounts-Output usegalaxy.eu support troubleshooting , htseq-count	8	1800	November 6, 2024
new galaxy installation stucked on "Adding service gunicorn" galaxy-local	3	22	November 5, 2024
error 139 with make.contigs usegalaxy.org support mothur , mothur_make_contigs	1	5	November 5, 2024
PICRUSt2 Full pipeline tool-help , picrust2_pipeline , picrust	2	4	November 5, 2024
can i perform docking for a protein without ligand usegalaxy.eu support proteomics	1	3	November 5, 2024
MiModD Extract Variant Sites - filtering germline variant-analysis	1	2	November 5, 2024
Snpeff eff error due to incompatible database version usegalaxy.org support tool-help , snpeff , snpeff_build_gb	3	8	November 5, 2024
error with format .txt usegalaxy.org.au support upload , fastqsanger , fasterq_dump	2	9	November 5, 2024
Database for Kraken2 usegalaxy.org support reference-index	3	24	November 5, 2024
the metadata and error of qiime2 import usegalaxy.org support qiime2 , qiime2_core__tools__import	3	14	November 4, 2024
How to provide more threads for tools using Production Environment? galaxy-local	1	4	November 4, 2024
RNA STARSolo out of memory: where to adjust memory/node? usegalaxy.org support exceeds-memory-error , tool-help , rna_starsolo	3	18	November 4, 2024
featureCounts multiple input files in workflow usegalaxy.org support workflow	3	9	November 4, 2024
Error (Red) from “Generate MD topologies for small molecules ( Galaxy version 21.3+galaxy0)”. usegalaxy.eu support tool-help , gromacs , ambertools_acpype	6	9	November 4, 2024
Pear output format tool-help , pear	7	17	November 4, 2024
Gene ID's being filtered out in ChipSeq analysis usegalaxy.org.au support chip-seq , data-manipulation , reference-annotation , tool-help , get_flanks1	5	15	November 4, 2024
Interproscan format issues usegalaxy.eu support troubleshooting , mapping , tool-help	1	13	November 4, 2024
trouble with goseq usegalaxy.org support transcriptomics	5	8	November 4, 2024
How to find Adapter sequence for trimming troubleshooting , fastqc , geo	1	15	October 31, 2024
Annotate DESeq2/DEXSeq output tables usegalaxy.org support tool-help , deg_annotate	3	12	October 31, 2024

What should I do if my data exceeds the given 250GB of storage?

I’m working on a transciptomics data which will probably exceed the given 250GB data. Is there any possible solution to this? for example increasing my storage?

3

436

August 15, 2024

Troubleshooting resources for errors or unexpected results

share-or-publish , troubleshooting , queued-gray-datasets , resources

How to troubleshoot your work in Galaxy, and how to ask for help! :mag_right: Review your Job Details → inputs + parameters + logs using the i-icon inside of any dataset. :mortar_board: Learn with a tutorial and custom…

5

10371

April 17, 2024

Make.contigs (Mothur error)

tool-help , mothur , mothur_make_contigs